opencv by opencv

Open Source Computer Vision Library

updated at May 26, 2024, 6:27 a.m.

2,655 +0

76,107 +138

55,621 +2

deepslide by BMIRDS

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

updated at May 26, 2024, 5:49 a.m.

17 +0

476 +1

135 +0

CaPTk by CBICA

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

updated at May 26, 2024, 5:47 a.m.

4 +0

172 +3

62 +0

plant-seg by kreshuklab

A tool for cell instance aware segmentation in densely packed 3D volumetric images

updated at May 25, 2024, 11:46 p.m.

7 +0

86 +1

30 +0

scikit-image by scikit-image

Image processing in Python

updated at May 25, 2024, 9:07 p.m.

186 -1

5,901 +0

2,205 +5

Trainable_Segmentation by fiji

Fiji library to perform image segmentation based on the Weka learning schemes

updated at May 25, 2024, 5:02 p.m.

24 +0

105 +2

60 +0

Slicer by Slicer

Multi-platform, free open source software for visualization and image computing.

updated at May 25, 2024, 4:21 p.m.

38 +0

1,506 +10

511 +4

CaImAn by flatironinstitute

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

updated at May 25, 2024, 1:14 p.m.

47 +0

609 +3

356 +0

stardist by stardist

StarDist - Object Detection with Star-convex Shapes

updated at May 25, 2024, 11:19 a.m.

29 +0

826 +5

213 +0

ImageJ by imagej

Public domain software for processing and analyzing scientific images

updated at May 25, 2024, 6:48 a.m.

48 +0

491 +7

210 +0

ZeroCostDL4Mic by HenriquesLab

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

updated at May 25, 2024, 5:34 a.m.

36 +0

543 +4

127 +0

imagej2 by imagej

Open scientific N-dimensional image processing

updated at May 25, 2024, 1:03 a.m.

92 +0

1,110 +4

328 +1

imagepy by Image-Py

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

updated at May 25, 2024, 12:48 a.m.

81 +0

1,287 +2

329 +0

napari by napari

napari: a fast, interactive, multi-dimensional image viewer for python

updated at May 24, 2024, 11:13 p.m.

48 +0

2,077 +2

409 -1

cellSAM by vanvalenlab

Codebase for "A Foundation Model for Cell Segmentation"

updated at May 24, 2024, 10:52 p.m.

4 +0

10 -1

4 +0

CellProfiler by CellProfiler

An open-source application for biological image analysis

updated at May 24, 2024, 9:46 p.m.

44 +0

866 +2

366 +0

pytorch_connectomics by zudi-lin

PyTorch Connectomics: segmentation toolbox for EM connectomics

updated at May 24, 2024, 8:30 p.m.

6 +0

163 +0

74 +0

neurite by adalca

Neural networks toolbox focused on medical image analysis

updated at May 24, 2024, 7:36 p.m.

21 +0

319 +2

65 +0

micro-sam by computational-cell-analytics

Segment Anything for Microscopy

updated at May 24, 2024, 7:32 p.m.

7 +0

303 +5

35 +0

Cell_ACDC by SchmollerLab

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

updated at May 24, 2024, 6:36 p.m.

5 +0

118 +1

20 +0