imagej2 by imagej

Open scientific N-dimensional image processing

created at Jan. 26, 2012, 6:32 p.m.

93 +0

1,191 +4

333 +0

ImageJ by imagej

Public domain software for processing and analyzing scientific images

created at Aug. 1, 2011, 12:29 p.m.

50 +0

571 +4

225 +1

TrackMate by trackmate-sc

TrackMate is your buddy for your everyday tracking.

created at Dec. 19, 2013, 8:01 p.m.

20 +0

169 +4

75 +0

Trainable_Segmentation by fiji

Fiji library to perform image segmentation based on the Weka learning schemes

created at April 3, 2014, 2:52 p.m.

23 +0

112 +0

61 +0

MorphoLibJ by ijpb

Collection of mathematical morphology methods and plugins for ImageJ

created at Feb. 10, 2014, 1:49 p.m.

17 +0

101 +0

48 +0

thunderstorm by zitmen

ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging

created at May 3, 2015, 6:59 p.m.

18 +0

95 +1

42 +0

RS-FISH by PreibischLab

Tool for precise, interactive, fast and scalable FISH spot detection

created at Oct. 4, 2017, 5:01 p.m.

12 +0

46 +0

14 +0

ZstackDepthColorCode by UU-cellbiology

Z-stack Depth Colorcode ImageJ FIJI plugin

created at Jan. 11, 2021, 3:31 p.m.

3 +0

22 +1

7 +0

BoneJ2 by bonej-org

Plugins for bone image analysis

created at March 29, 2016, 1:11 p.m.

7 +0

20 +0

12 +0

mia by mianalysis

Modular, object-based analysis for ImageJ/Fiji

created at March 16, 2018, 11:43 a.m.

2 +0

11 +0

2 +0

QuimP by CellDynamics

QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

created at Jan. 24, 2017, 11:12 a.m.

5 +0

7 +0

1 +0