SyMBac by georgeoshardo

Accurate segmentation of bacterial microscope images using synthetically generated image data.

created at Feb. 9, 2021, 2:57 a.m.

4 +0

17 +0

9 +0

cellSAM by vanvalenlab

Codebase for "A Foundation Model for Cell Segmentation"

created at Feb. 14, 2024, 10:41 p.m.

4 +0

27 +4

5 +0

MAPS by mahmoodlab

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

created at April 10, 2023, 8:42 p.m.

3 +0

33 +0

5 +0

ark-analysis by angelolab

Integrated pipeline for multiplexed image analysis

created at Jan. 7, 2019, 4:31 a.m.

10 +0

67 +0

24 +0

OAD by zeiss-microscopy

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

created at Oct. 27, 2018, 4:42 p.m.

18 +0

121 +0

47 +0

Usiigaci by oist

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

created at June 15, 2018, 4:01 a.m.

13 -1

191 +0

68 +0

micro-sam by computational-cell-analytics

Segment Anything for Microscopy

created at May 3, 2023, 11:36 a.m.

7 +0

308 +2

34 +0

suite2p by MouseLand

cell detection in calcium imaging recordings

created at July 16, 2018, 6:12 p.m.

17 +0

329 +0

237 +0

ZeroCostDL4Mic by HenriquesLab

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

created at Feb. 12, 2020, 9:18 a.m.

35 +0

551 +2

128 +0

cellpose by MouseLand

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

created at Feb. 1, 2020, 10:29 p.m.

29 +0

1,234 +8

357 +3