cellpose by MouseLand

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

updated at June 22, 2024, 4:47 p.m.

29 +0

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ark-analysis by angelolab

Integrated pipeline for multiplexed image analysis

updated at June 20, 2024, 10:15 p.m.

10 +0

67 +0

24 +0

micro-sam by computational-cell-analytics

Segment Anything for Microscopy

updated at June 20, 2024, 9:13 p.m.

7 +0

308 +2

34 +0

ZeroCostDL4Mic by HenriquesLab

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

updated at June 20, 2024, 9:48 a.m.

35 +0

551 +2

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cellSAM by vanvalenlab

Codebase for "A Foundation Model for Cell Segmentation"

updated at June 17, 2024, 9:21 a.m.

4 +0

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Usiigaci by oist

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

updated at June 12, 2024, 6:16 p.m.

13 -1

191 +0

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MAPS by mahmoodlab

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

updated at June 12, 2024, 6:59 a.m.

3 +0

33 +0

5 +0

OAD by zeiss-microscopy

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

updated at June 11, 2024, 11:15 a.m.

18 +0

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SyMBac by georgeoshardo

Accurate segmentation of bacterial microscope images using synthetically generated image data.

updated at June 3, 2024, 9:20 p.m.

4 +0

17 +0

9 +0

suite2p by MouseLand

cell detection in calcium imaging recordings

updated at May 22, 2024, 10:43 p.m.

17 +0

329 +0

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