🔬Python package for high-throughput single-cell imaging analysis.
created at Feb. 21, 2016, 10:25 a.m.
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
created at July 8, 2020, 11:32 a.m.
Accurate and efficient spot detection for microscopy data
created at Feb. 2, 2024, 5:28 p.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
A package for storing morphological profiling data.
created at Jan. 6, 2016, 9 p.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.