Plant phenotyping with image analysis
created at March 14, 2014, 6:24 p.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
a python based software for visualization of neuroanatomical and morphological data.
created at Sept. 19, 2019, 9:27 a.m.
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
created at June 27, 2019, 4:43 p.m.
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
created at Dec. 26, 2018, 1:51 a.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
created at Nov. 10, 2011, 6:57 p.m.