Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
created at July 8, 2020, 11:32 a.m.
🔬Python package for high-throughput single-cell imaging analysis.
created at Feb. 21, 2016, 10:25 a.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
Accurate and efficient spot detection for microscopy data
created at Feb. 2, 2024, 5:28 p.m.
A package for storing morphological profiling data.
created at Jan. 6, 2016, 9 p.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
Pure Python library for reading NIS Elements ND2 images and metadata
created at Feb. 14, 2017, 3:47 p.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.
PyTorch Connectomics: segmentation toolbox for EM connectomics
created at March 27, 2019, 4:13 p.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.