Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.
PyTorch Connectomics: segmentation toolbox for EM connectomics
created at March 27, 2019, 4:13 p.m.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
created at Nov. 10, 2011, 6:57 p.m.
Read and write Neuroglancer datasets programmatically.
created at July 25, 2017, 5:34 p.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
Accurate and efficient spot detection for microscopy data
created at Feb. 2, 2024, 5:28 p.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.