Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
created at June 27, 2019, 4:43 p.m.
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
Read and write Neuroglancer datasets programmatically.
created at July 25, 2017, 5:34 p.m.
Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
Pure Python library for reading NIS Elements ND2 images and metadata
created at Feb. 14, 2017, 3:47 p.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
Toolbox for the analysis of smFISH images.
created at Dec. 17, 2018, 12:26 p.m.
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.