Image quality is an open source software library for Image Quality Assessment (IQA).
created at July 6, 2019, 4:28 p.m.
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
created at June 27, 2019, 4:43 p.m.
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
Toolbox for the analysis of smFISH images.
created at Dec. 17, 2018, 12:26 p.m.
A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.