Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
created at Aug. 6, 2015, 1:58 p.m.
Plant phenotyping with image analysis
created at March 14, 2014, 6:24 p.m.
An open-source application for biological image analysis
created at April 5, 2011, 12:10 p.m.
Read and write Neuroglancer datasets programmatically.
created at July 25, 2017, 5:34 p.m.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
created at Nov. 10, 2011, 6:57 p.m.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
created at Dec. 26, 2018, 1:51 a.m.
Deep Learning Library for Single Cell Analysis
created at May 16, 2018, 5:41 p.m.
a python based software for visualization of neuroanatomical and morphological data.
created at Sept. 19, 2019, 9:27 a.m.
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
Automated 3D cell detection in very large images
created at Jan. 17, 2020, 2:14 p.m.
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.