XitoSBML - the spatial SBML plugin for ImageJ
updated at Nov. 17, 2021, 1:54 p.m.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
updated at Oct. 14, 2022, 8:09 a.m.
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
updated at Jan. 10, 2023, 5:51 a.m.
Analysis of cell migration in Igor Pro
updated at Feb. 13, 2023, 12:17 p.m.
Pure Python library for reading NIS Elements ND2 images and metadata
updated at May 15, 2023, 3:46 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
updated at June 8, 2023, 10:11 a.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
updated at Jan. 12, 2024, 6:12 p.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
updated at Jan. 23, 2024, 6:43 p.m.
Single-cell fluorescence microscopy data analysis
updated at Feb. 13, 2024, 6:15 a.m.
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
updated at Feb. 26, 2024, 8:34 a.m.
R package for segmentation, registration and generating web-based brain atlases from microscope images
updated at March 11, 2024, 10:49 p.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
updated at April 3, 2024, 4:03 a.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
updated at April 4, 2024, 11:01 a.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
updated at April 15, 2024, 8:54 a.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
updated at April 17, 2024, 10:39 p.m.
Efficient cell detection in large images using cellfinder in napari
updated at April 18, 2024, 10:17 p.m.