XitoSBML - the spatial SBML plugin for ImageJ
created at Nov. 3, 2016, 6:28 a.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.
Application to extract features from plant root images
created at Jan. 30, 2019, 4:59 p.m.
ImageJ functions and macros for working with thermal image files
created at April 19, 2019, 2:06 p.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
created at Feb. 13, 2020, 3 p.m.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
A package for storing morphological profiling data.
created at Jan. 6, 2016, 9 p.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Image classification of Fungus using ResNet
created at Oct. 14, 2019, 4:50 a.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.