YeaZ-GUI by rahi-lab

An interactive tool for segmenting yeast cells using deep learning.

updated at April 21, 2024, 9:19 a.m.

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ijp-color by ij-plugins

Plugins for ImageJ - color space conversions and color calibration

updated at April 21, 2024, 5:29 p.m.

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em-scalebartools by lukmuk

Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.

updated at April 24, 2024, 7:26 a.m.

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cytominer-database by cytomining

A package for storing morphological profiling data.

updated at April 28, 2024, 11:11 a.m.

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htsimaging by rraadd88

🔬Python package for high-throughput single-cell imaging analysis.

updated at April 29, 2024, 2:06 p.m.

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quanfima by rshkarin

Quanfima (Quantitative Analysis of Fibrous Materials)

updated at May 2, 2024, 6:02 p.m.

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napari-aicsimageio by AllenCellModeling

Multiple file format reading directly into napari using pure Python

updated at May 3, 2024, 3:26 p.m.

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nefi by 05dirnbe

Network Extraction From Images

updated at May 3, 2024, 6:09 p.m.

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brainreg-napari by brainglobe

Automated 3D brain registration in napari with support for multiple species and atlases.

updated at May 3, 2024, 10:19 p.m.

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aradeepopsis by Gregor-Mendel-Institute

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

updated at May 4, 2024, 6:19 a.m.

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cellshape by Sentinal4D

3D shape analysis using deep learning

updated at May 6, 2024, 9:20 p.m.

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minerva-story by labsyspharm

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

updated at May 8, 2024, 6:52 p.m.

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RhizoVisionExplorer by rootphenomicslab

Application to extract features from plant root images

updated at May 9, 2024, 2:46 p.m.

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FFT by hsueh-lab

Fungal Feature Tracker (FFT): A tool to quantitatively characterize morphology and growth of filamentous fungi

updated at May 11, 2024, 11:23 a.m.

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BoneJ2 by bonej-org

Plugins for bone image analysis

updated at May 20, 2024, 10:49 a.m.

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rivuletpy by RivuletStudio

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

updated at May 21, 2024, 9:11 a.m.

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pyImSegm by Borda

Image segmentation - general superpixel segmentation & center detection & region growing

updated at May 22, 2024, 3:36 a.m.

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suite2p by MouseLand

cell detection in calcium imaging recordings

updated at May 22, 2024, 10:43 p.m.

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Trainable_Segmentation by fiji

Fiji library to perform image segmentation based on the Weka learning schemes

updated at May 25, 2024, 5:02 p.m.

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CaPTk by CBICA

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

updated at May 26, 2024, 5:47 a.m.

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