Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
created at March 18, 2020, 1:57 p.m.
Codebase for "A Foundation Model for Cell Segmentation"
created at Feb. 14, 2024, 10:41 p.m.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
Noise Correction Algorithm for sCMOS cameras
created at July 10, 2017, 7:26 p.m.
Image classification of Fungus using ResNet
created at Oct. 14, 2019, 4:50 a.m.
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
created at April 16, 2020, 12:11 a.m.
Pure Python library for reading NIS Elements ND2 images and metadata
created at Feb. 14, 2017, 3:47 p.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
created at Jan. 24, 2017, 11:12 a.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
XitoSBML - the spatial SBML plugin for ImageJ
created at Nov. 3, 2016, 6:28 a.m.
Plugins for ImageJ - color space conversions and color calibration
created at April 28, 2014, 2:59 a.m.
Analysis of cell migration in Igor Pro
created at Aug. 19, 2015, 12:10 p.m.
PyTorch Connectomics: segmentation toolbox for EM connectomics
created at March 27, 2019, 4:13 p.m.
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
created at Nov. 7, 2017, 10:11 a.m.
Gaussian processes and Bayesian optimization for images and hyperspectral data
created at Feb. 18, 2020, 7:28 p.m.
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
created at Feb. 13, 2020, 3 p.m.