Tool for precise, interactive, fast and scalable FISH spot detection
created at Oct. 4, 2017, 5:01 p.m.
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
created at Dec. 16, 2019, 7:39 p.m.
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
Toolbox for the analysis of smFISH images.
created at Dec. 17, 2018, 12:26 p.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
⚡ Open-source software for deep learning-based digital pathology
created at July 9, 2019, 12:28 p.m.
Integrated pipeline for multiplexed image analysis
created at Jan. 7, 2019, 4:31 a.m.
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
Non-comprehensive list of projects and resources related to open microscopy.
created at Sept. 28, 2021, 8:51 a.m.