RS-FISH by PreibischLab
Tool for precise, interactive, fast and scalable FISH spot detection
updated at May 27, 2024, 3:06 p.m.
SyMBac by georgeoshardo
Accurate segmentation of bacterial microscope images using synthetically generated image data.
updated at June 3, 2024, 9:20 p.m.
ThermImageJ by gtatters
ImageJ functions and macros for working with thermal image files
updated at June 4, 2024, 5:23 p.m.
NCS by HuanglabPurdue
Noise Correction Algorithm for sCMOS cameras
updated at June 6, 2024, 12:24 a.m.
root_painter by Abe404
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
updated at June 6, 2024, 3:11 p.m.
paquo by Bayer-Group
PAthological QUpath Obsession - QuPath and Python conversations
updated at June 7, 2024, 3:48 a.m.
big-fish by fish-quant
Toolbox for the analysis of smFISH images.
updated at June 9, 2024, 2:39 a.m.
cellfinder by brainglobe
Automated 3D cell detection in very large images
updated at June 10, 2024, 8:55 a.m.
LLSpy by tlambert03
Lattice light-sheet post-processing utility.
updated at June 11, 2024, 9:46 a.m.
OAD by zeiss-microscopy
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
updated at June 11, 2024, 11:15 a.m.
plant-seg by kreshuklab
A tool for cell instance aware segmentation in densely packed 3D volumetric images
updated at June 11, 2024, 3:55 p.m.
DeepMushroom by Olament
Image classification of Fungus using ResNet
updated at June 11, 2024, 5:53 p.m.
MAPS by mahmoodlab
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
updated at June 12, 2024, 6:59 a.m.
image-quality by ocampor
Image quality is an open source software library for Image Quality Assessment (IQA).
updated at June 12, 2024, 10:29 a.m.
deepslide by BMIRDS
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
updated at June 12, 2024, 10:33 p.m.