Application to extract features from plant root images
created at Jan. 30, 2019, 4:59 p.m.
A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
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Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
Segment Anything for Microscopy
created at May 3, 2023, 11:36 a.m.
Toolbox for the analysis of smFISH images.
created at Dec. 17, 2018, 12:26 p.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
⚡ Open-source software for deep learning-based digital pathology
created at July 9, 2019, 12:28 p.m.
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
ImageJ functions and macros for working with thermal image files
created at April 19, 2019, 2:06 p.m.
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
R package for segmentation, registration and generating web-based brain atlases from microscope images
created at Oct. 29, 2015, 5:43 p.m.