Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
An open-source application for biological image analysis
created at April 5, 2011, 12:10 p.m.
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
created at Aug. 6, 2015, 1:58 p.m.
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
created at Aug. 10, 2021, 9:41 a.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
created at Aug. 10, 2020, 1:59 p.m.
Multiple file format reading directly into napari using pure Python
created at March 20, 2020, 5:52 p.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
created at March 18, 2020, 1:57 p.m.
Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
XitoSBML - the spatial SBML plugin for ImageJ
created at Nov. 3, 2016, 6:28 a.m.
Image quality is an open source software library for Image Quality Assessment (IQA).
created at July 6, 2019, 4:28 p.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.