aicsimageio by AllenCellModeling
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
created at June 27, 2019, 4:43 p.m.
micro-sam by computational-cell-analytics
Segment Anything for Microscopy
created at May 3, 2023, 11:36 a.m.
image-quality by ocampor
Image quality is an open source software library for Image Quality Assessment (IQA).
created at July 6, 2019, 4:28 p.m.
deepcell-tf by vanvalenlab
Deep Learning Library for Single Cell Analysis
created at May 16, 2018, 5:41 p.m.
deepslide by BMIRDS
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
created at Dec. 26, 2018, 1:51 a.m.
SimpleElastix by SuperElastix
Multi-lingual medical image registration library
created at Nov. 20, 2014, 9:51 a.m.
brainrender by brainglobe
a python based software for visualization of neuroanatomical and morphological data.
created at Sept. 19, 2019, 9:27 a.m.
ZeroCostDL4Mic by HenriquesLab
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
created at Feb. 12, 2020, 9:18 a.m.
CaImAn by flatironinstitute
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
created at Aug. 6, 2015, 1:58 p.m.
plantcv by danforthcenter
Plant phenotyping with image analysis
created at March 14, 2014, 6:24 p.m.
