dypfish by cbib

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images

created at Dec. 15, 2017, 8:56 a.m.

Python

7 +0

1 +0

1 +0

GitHub
MAPS by mahmoodlab

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

created at April 10, 2023, 8:42 p.m.

Jupyter Notebook

3 +0

30 +0

5 +0

GitHub
brainglobe-atlasapi by brainglobe

A lightweight python module to interact with atlases for systems neuroscience

created at April 30, 2020, 11:10 a.m.

Python

10 +0

113 +0

23 +0

GitHub
micro-sam by computational-cell-analytics

Segment Anything for Microscopy

created at May 3, 2023, 11:36 a.m.

Jupyter Notebook

7 +0

303 +5

35 +0

GitHub
spotiflow by weigertlab

Accurate and efficient spot detection for microscopy data

created at Feb. 2, 2024, 5:28 p.m.

Python

3 +0

42 +1

4 +0

GitHub
htsimaging by rraadd88

🔬Python package for high-throughput single-cell imaging analysis.

created at Feb. 21, 2016, 10:25 a.m.

Python

2 +0

5 +0

1 +0

GitHub
cellSAM by vanvalenlab

Codebase for "A Foundation Model for Cell Segmentation"

created at Feb. 14, 2024, 10:41 p.m.

Jupyter Notebook

4 +0

10 -1

4 +0

GitHub
RhizoVisionExplorer by rootphenomicslab

Application to extract features from plant root images

created at Jan. 30, 2019, 4:59 p.m.

C++

7 +0

11 +0

6 +0

GitHub
plant-seg by kreshuklab

A tool for cell instance aware segmentation in densely packed 3D volumetric images

created at Oct. 18, 2019, 10:56 a.m.

Python

7 +0

86 +1

30 +0

GitHub