brainglobe-atlasapi by brainglobe
A lightweight python module to interact with atlases for systems neuroscience
created at April 30, 2020, 11:10 a.m.
brainreg by brainglobe
Automated 3D brain registration with support for multiple species and atlases.
created at May 26, 2020, 2:36 p.m.
FAST-Pathology by AICAN-Research
⚡ Open-source software for deep learning-based digital pathology
created at July 9, 2019, 12:28 p.m.
axondeepseg by axondeepseg
Axon/Myelin segmentation using Deep Learning
created at Sept. 26, 2016, 2:20 p.m.
Trainable_Segmentation by fiji
Fiji library to perform image segmentation based on the Weka learning schemes
created at April 3, 2014, 2:52 p.m.
picasso by jungmannlab
A collection of tools for painting super-resolution images
created at Oct. 27, 2016, 8:13 a.m.
paquo by Bayer-Group
PAthological QUpath Obsession - QuPath and Python conversations
created at July 6, 2020, 12:21 p.m.
MorphoLibJ by ijpb
Collection of mathematical morphology methods and plugins for ImageJ
created at Feb. 10, 2014, 1:49 p.m.
plant-seg by kreshuklab
A tool for cell instance aware segmentation in densely packed 3D volumetric images
created at Oct. 18, 2019, 10:56 a.m.
thunderstorm by zitmen
ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
created at May 3, 2015, 6:59 p.m.
wholebrain by tractatus
R package for segmentation, registration and generating web-based brain atlases from microscope images
created at Oct. 29, 2015, 5:43 p.m.
python-microscopy by python-microscopy
The python-microscopy environment - an open-source package for light microscopy
created at Nov. 28, 2019, 2:12 a.m.
pycytominer by cytomining
Python package for processing image-based profiling data
created at July 3, 2019, 6:22 p.m.
ark-analysis by angelolab
Integrated pipeline for multiplexed image analysis
created at Jan. 7, 2019, 4:31 a.m.
Image processing toolbox for Rpyotf by david-hoffman
python functions for simulating optical transfer functions
created at Sept. 21, 2016, 3:02 p.m.
DeepMushroom by Olament
Image classification of Fungus using ResNet
created at Oct. 14, 2019, 4:50 a.m.
rivuletpy by RivuletStudio
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
created at July 1, 2016, 6:49 a.m.