mia by mianalysis

Modular, object-based analysis for ImageJ/Fiji

created at March 16, 2018, 11:43 a.m.

2 +0

11 +0

2 +0

dypfish by cbib

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images

created at Dec. 15, 2017, 8:56 a.m.

7 +0

2 +0

1 +0

flika by flika-org

An interactive image processing program for biologists written in Python.

created at May 27, 2015, 5:25 p.m.

7 +0

22 +0

1 +0

QuimP by CellDynamics

QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

created at Jan. 24, 2017, 11:12 a.m.

5 +0

7 +0

1 +0

CompactionAnalyzer by davidbhr

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

created at July 8, 2020, 11:32 a.m.

0 +0

7 +0

1 +0

TrackMateR by quantixed

Analysis of TrackMate XML outputs in R

created at Jan. 30, 2022, 3:42 p.m.

3 +0

12 +0

1 +0

em-scalebartools by lukmuk

Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.

created at Aug. 10, 2021, 9:41 a.m.

2 +0

12 +0

1 +0

htsimaging by rraadd88

🔬Python package for high-throughput single-cell imaging analysis.

created at Feb. 21, 2016, 10:25 a.m.

2 +0

5 +0

1 +0

ZFVascularQuantification by ElisabethKugler

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

created at Aug. 10, 2020, 1:59 p.m.

2 +0

10 +0

0 +0

ddpsc_phenotypercv by jberry47

Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping

created at Nov. 7, 2018, 1:32 p.m.

2 +0

4 +0

0 +0

empanada by volume-em

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

created at Dec. 1, 2021, 4:02 p.m.

1 +0

2 +0

0 +0

SALEM2 by JackieZhai

SALEM^2: Segment Anything in Light and Electron Microscopy via Membrane Guidance

created at Nov. 23, 2023, 3:01 a.m.

1 +0

4 +0

0 +0