Single-cell fluorescence microscopy data analysis
created at May 30, 2017, 12:26 p.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
created at Sept. 9, 2014, 10:56 p.m.
Plugins for ImageJ - color space conversions and color calibration
created at April 28, 2014, 2:59 a.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
Application to extract features from plant root images
created at Jan. 30, 2019, 4:59 p.m.
NEW!
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
created at Aug. 10, 2021, 9:41 a.m.
Modular, object-based analysis for ImageJ/Fiji
created at March 16, 2018, 11:43 a.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
created at Aug. 10, 2020, 1:59 p.m.
A package for storing morphological profiling data.
created at Jan. 6, 2016, 9 p.m.
Codebase for "A Foundation Model for Cell Segmentation"
created at Feb. 14, 2024, 10:41 p.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
created at March 18, 2020, 1:57 p.m.