CellProfiler by CellProfiler

An open-source application for biological image analysis

created at April 5, 2011, 12:10 p.m.

44 +0

861 +1

366 +0

fiji by fiji

A "batteries-included" distribution of ImageJ

created at April 13, 2011, 10:39 p.m.

50 +0

710 +1

231 +0

scikit-image by scikit-image

Image processing in Python

created at July 7, 2011, 10:07 p.m.

186 +0

5,890 +10

2,194 +3

ImageJ by imagej

Public domain software for processing and analyzing scientific images

created at Aug. 1, 2011, 12:29 p.m.

47 +0

479 +5

209 +2

CellProfiler-Analyst by CellProfiler

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

created at Nov. 10, 2011, 6:57 p.m.

21 +0

140 +0

72 +0

imagej2 by imagej

Open scientific N-dimensional image processing

created at Jan. 26, 2012, 6:32 p.m.

91 +0

1,098 +1

327 +0

ilastik by ilastik

ilastik-shell, applets, and workflows to string them together.

created at May 8, 2012, 3:59 p.m.

41 +0

338 +1

130 +0

opencv by opencv

Open Source Computer Vision Library

created at July 19, 2012, 9:40 a.m.

2,654 +0

75,855 +133

55,604 -7

TrackMate by trackmate-sc

TrackMate is your buddy for your everyday tracking.

created at Dec. 19, 2013, 8:01 p.m.

21 +0

143 +1

71 +1

nat by natverse

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

created at Jan. 2, 2014, 7:54 a.m.

17 +0

60 +0

25 +0

MorphoLibJ by ijpb

Collection of mathematical morphology methods and plugins for ImageJ

created at Feb. 10, 2014, 1:49 p.m.

18 +0

95 +0

49 +1

plantcv by danforthcenter

Plant phenotyping with image analysis

created at March 14, 2014, 6:24 p.m.

46 +0

614 +1

257 +0

Trainable_Segmentation by fiji

Fiji library to perform image segmentation based on the Weka learning schemes

created at April 3, 2014, 2:52 p.m.

24 +0

102 +0

60 +0

ijp-color by ij-plugins

Plugins for ImageJ - color space conversions and color calibration

created at April 28, 2014, 2:59 a.m.

5 +0

22 +0

2 +0

EBImage by aoles

Image processing toolbox for R

created at Aug. 15, 2014, 3:25 p.m.

13 +0

68 +1

28 +0

DIRT by Computational-Plant-Science

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

created at Sept. 9, 2014, 10:56 p.m.

7 +0

23 +0

15 +0

SimpleElastix by SuperElastix

Multi-lingual medical image registration library

created at Nov. 20, 2014, 9:51 a.m.

22 +0

505 +1

149 +0

thunderstorm by zitmen

ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging

created at May 3, 2015, 6:59 p.m.

18 +0

89 +0

42 +0

flika by flika-org

An interactive image processing program for biologists written in Python.

created at May 27, 2015, 5:25 p.m.

7 +0

22 +0

1 +0

CaImAn by flatironinstitute

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

created at Aug. 6, 2015, 1:58 p.m.

47 +0

604 +1

355 -1