Codebase for "A Foundation Model for Cell Segmentation"
created at Feb. 14, 2024, 10:41 p.m.
Accurate and efficient spot detection for microscopy data
created at Feb. 2, 2024, 5:28 p.m.
Segment Anything for Microscopy
created at May 3, 2023, 11:36 a.m.
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
created at April 10, 2023, 8:42 p.m.
Non-comprehensive list of projects and resources related to open microscopy.
created at Sept. 28, 2021, 8:51 a.m.
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
created at Aug. 10, 2021, 9:41 a.m.
Automated 3D brain registration in napari with support for multiple species and atlases.
created at July 2, 2021, 2:11 p.m.
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
created at May 5, 2021, 3:38 p.m.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
created at Feb. 25, 2021, 4:14 p.m.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
created at Feb. 9, 2021, 2:57 a.m.
Efficient cell detection in large images using cellfinder in napari
created at Jan. 22, 2021, 1:21 p.m.
Z-stack Depth Colorcode ImageJ FIJI plugin
created at Jan. 11, 2021, 3:31 p.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
created at Aug. 10, 2020, 1:59 p.m.
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
created at July 8, 2020, 11:32 a.m.