opencv by opencv

Open Source Computer Vision Library

created at July 19, 2012, 9:40 a.m.

2,654 +0

75,855 +133

55,604 -7

scikit-image by scikit-image

Image processing in Python

created at July 7, 2011, 10:07 p.m.

186 +0

5,890 +10

2,194 +3

Slicer by Slicer

Multi-platform, free open source software for visualization and image computing.

created at March 12, 2020, 10:13 p.m.

38 +0

1,488 +6

507 +3

napari by napari

napari: a fast, interactive, multi-dimensional image viewer for python

created at Aug. 13, 2018, 1:12 a.m.

48 +0

2,069 +5

409 +2

CellProfiler by CellProfiler

An open-source application for biological image analysis

created at April 5, 2011, 12:10 p.m.

44 +0

861 +1

366 +0

CaImAn by flatironinstitute

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

created at Aug. 6, 2015, 1:58 p.m.

47 +0

604 +1

355 -1

cellpose by MouseLand

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

created at Feb. 1, 2020, 10:29 p.m.

30 +0

1,191 +7

347 +1

imagepy by Image-Py

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

created at Dec. 29, 2016, 7:35 a.m.

81 +0

1,284 +1

329 +0

imagej2 by imagej

Open scientific N-dimensional image processing

created at Jan. 26, 2012, 6:32 p.m.

91 +0

1,098 +1

327 +0

plantcv by danforthcenter

Plant phenotyping with image analysis

created at March 14, 2014, 6:24 p.m.

46 +0

614 +1

257 +0

suite2p by MouseLand

cell detection in calcium imaging recordings

created at July 16, 2018, 6:12 p.m.

18 +0

327 +0

232 +0

fiji by fiji

A "batteries-included" distribution of ImageJ

created at April 13, 2011, 10:39 p.m.

50 +0

710 +1

231 +0

stardist by stardist

StarDist - Object Detection with Star-convex Shapes

created at June 26, 2018, 7:54 p.m.

29 +1

815 +5

213 +0

ImageJ by imagej

Public domain software for processing and analyzing scientific images

created at Aug. 1, 2011, 12:29 p.m.

47 +0

479 +5

209 +2

SimpleElastix by SuperElastix

Multi-lingual medical image registration library

created at Nov. 20, 2014, 9:51 a.m.

22 +0

505 +1

149 +0

deepslide by BMIRDS

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

created at Dec. 26, 2018, 1:51 a.m.

17 +0

475 +1

135 +0

ilastik by ilastik

ilastik-shell, applets, and workflows to string them together.

created at May 8, 2012, 3:59 p.m.

41 +0

338 +1

130 +0

ZeroCostDL4Mic by HenriquesLab

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

created at Feb. 12, 2020, 9:18 a.m.

36 +0

537 +1

127 +0

n2v by juglab

This is the implementation of Noise2Void training.

created at Jan. 11, 2019, 5:43 p.m.

19 +0

371 +1

106 +1

deepcell-tf by vanvalenlab

Deep Learning Library for Single Cell Analysis

created at May 16, 2018, 5:41 p.m.

16 +0

391 +0

90 +0