XitoSBML - the spatial SBML plugin for ImageJ
updated at Nov. 17, 2021, 1:54 p.m.
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
updated at Oct. 14, 2022, 8:09 a.m.
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
updated at Jan. 10, 2023, 5:51 a.m.
Analysis of cell migration in Igor Pro
updated at Feb. 13, 2023, 12:17 p.m.
Pure Python library for reading NIS Elements ND2 images and metadata
updated at May 15, 2023, 3:46 p.m.
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
updated at June 8, 2023, 10:11 a.m.
DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.
updated at Jan. 12, 2024, 6:12 p.m.
Noise Correction Algorithm for sCMOS cameras
updated at Jan. 19, 2024, 10:13 a.m.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
updated at Jan. 23, 2024, 6:43 p.m.
Single-cell fluorescence microscopy data analysis
updated at Feb. 13, 2024, 6:15 a.m.
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
updated at Feb. 26, 2024, 8:34 a.m.
Lattice light-sheet post-processing utility.
updated at March 1, 2024, 12:27 p.m.
R package for segmentation, registration and generating web-based brain atlases from microscope images
updated at March 11, 2024, 10:49 p.m.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
updated at March 26, 2024, 10:54 a.m.
Image classification of Fungus using ResNet
updated at March 27, 2024, 4:53 a.m.