OpenChem by Mariewelt

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

created at July 10, 2018, 1:27 a.m.

Python

36 +0

670 +2

112 +0

GitHub
eiR by girke-lab

Accelerated similarity searching of small molecules (bioconductor package)

created at Feb. 24, 2014, 10:55 p.m.

R

4 +0

3 +0

0 +0

GitHub
chemminetools by girke-lab

ChemMine Tools: open source web framework for small molecule analysis

created at March 2, 2011, 7:12 p.m.

JavaScript

10 +0

36 +0

17 +0

GitHub
chempy by bjodah

⚗ A package useful for chemistry written in Python

created at May 25, 2015, 4:49 p.m.

Python

19 +0

545 +1

78 +0

GitHub
MolecularGraph.jl by mojaie

Graph-based molecule modeling toolkit for cheminformatics

created at Oct. 1, 2018, 11:55 a.m.

Julia

10 +1

195 +1

28 +0

GitHub
descriptastorus by bp-kelley

Descriptor computation(chemistry) and (optional) storage for machine learning

created at Dec. 17, 2018, 4:56 p.m.

Python

11 +0

222 +1

64 +0

GitHub
teachopencadd by volkamerlab

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

created at Nov. 9, 2018, 1:15 p.m.

Jupyter Notebook

32 +0

746 +8

200 +1

GitHub
opsin by dan2097

Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion

created at April 5, 2020, 3:41 p.m.

Java

6 +0

143 +0

31 +1

GitHub
chemmodlab by jrash

chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models

created at March 2, 2018, 5:10 a.m.

R

2 +0

15 +0

8 +0

GitHub
chemml by hachmannlab

ChemML is a machine learning and informatics program suite for the chemical and materials sciences.

created at Dec. 7, 2017, 4:48 a.m.

Python

14 +0

160 +0

29 +0

GitHub
ChEMBL_Structure_Pipeline by chembl

ChEMBL database structure pipelines

created at Feb. 6, 2019, 1:43 p.m.

Python

15 +0

185 +1

38 +0

GitHub
summit by sustainable-processes

Optimising chemical reactions using machine learning

created at July 31, 2019, 3:13 p.m.

Jupyter Notebook

8 +0

118 +1

24 +0

GitHub
pdb-tools by haddocking

A dependency-free cross-platform swiss army knife for PDB files.

created at Nov. 27, 2014, 9:09 a.m.

Python

14 +0

383 +0

113 +0

GitHub
awesome-small-molecule-ml by benb111

A curated list of resources for machine learning for small-molecule drug discovery

created at Dec. 22, 2021, 2:33 p.m.

Unknown languages

16 +0

194 +0

29 +1

GitHub
CGRtools by cimm-kzn

CGRs, molecules and reactions manipulation

created at Dec. 23, 2020, 10:34 a.m.

Python

3 +0

43 +0

16 +0

GitHub
auto-qchem by doyle-lab-ucla

Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.

created at Nov. 12, 2019, 5:03 p.m.

Python

5 +0

83 +2

18 +2

GitHub
olorenchemengine by Oloren-AI

OCE is the first infinitely composable library for reproducibly implementing SOTA molecular property prediction/QSAR techniques.

created at Aug. 24, 2022, 3:52 a.m.

Python

5 +0

96 +0

15 +0

GitHub
dgl-lifesci by awslabs

Python package for graph neural networks in chemistry and biology

created at April 23, 2020, 7:14 a.m.

Python

17 +0

712 +2

145 +1

GitHub
confgen-webapp by Et9797

Webapp for generating small ligand conformers

created at Jan. 23, 2021, 12:37 a.m.

HTML

2 +0

5 +0

0 +0

GitHub
rdchiral by connorcoley

Wrapper for RDKit's RunReactants to improve stereochemistry handling

created at June 17, 2017, 1:57 p.m.

Jupyter Notebook

19 +0

154 +1

51 +0

GitHub