datamol by datamol-org

Molecular Processing Made Easy.

created at Feb. 23, 2021, 3:39 p.m.

Python

17 +0

434 +2

46 +0

GitHub
dgl-lifesci by awslabs

Python package for graph neural networks in chemistry and biology

created at April 23, 2020, 7:14 a.m.

Python

17 +0

690 +0

144 +0

GitHub
awesome-small-molecule-ml by benb111

A curated list of resources for machine learning for small-molecule drug discovery

created at Dec. 22, 2021, 2:33 p.m.

Unknown languages

16 +0

179 +1

27 +0

GitHub
py4chemoinformatics by Mishima-syk

Python for chemoinformatics

created at Dec. 12, 2018, 6:39 a.m.

Jupyter Notebook

16 +0

218 +1

85 +0

GitHub
pdb-tools by haddocking

A dependency-free cross-platform swiss army knife for PDB files.

created at Nov. 27, 2014, 9:09 a.m.

Python

15 +0

366 +1

112 +0

GitHub
rd_filters by PatWalters

A script to run structural alerts using the RDKit and ChEMBL

created at Aug. 8, 2018, 1:29 a.m.

Python

15 +0

121 +0

36 +1

GitHub
ChEMBL_Structure_Pipeline by chembl

ChEMBL database structure pipelines

created at Feb. 6, 2019, 1:43 p.m.

Python

15 +0

179 +0

38 +0

GitHub
chemml by hachmannlab

ChemML is a machine learning and informatics program suite for the chemical and materials sciences.

created at Dec. 7, 2017, 4:48 a.m.

Python

14 +0

154 -1

29 +0

GitHub
descriptastorus by bp-kelley

Descriptor computation(chemistry) and (optional) storage for machine learning

created at Dec. 17, 2018, 4:56 p.m.

Python

11 +0

212 +3

59 +0

GitHub
mol2vec by samoturk

Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures

created at Nov. 16, 2017, 12:02 a.m.

Python

11 +0

246 +0

107 +2

GitHub
chemminetools by girke-lab

ChemMine Tools: open source web framework for small molecule analysis

created at March 2, 2011, 7:12 p.m.

JavaScript

10 +0

35 +0

17 +0

GitHub
dockstring by dockstring

A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.

created at April 22, 2021, 2:09 a.m.

Python

10 +0

138 +2

29 +0

GitHub
rdeditor by EBjerrum

Simple RDKit molecule editor GUI using PySide

created at Sept. 13, 2018, 8:57 a.m.

Python

9 +0

113 +0

31 +0

GitHub
MolecularGraph.jl by mojaie

Graph-based molecule modeling toolkit for cheminformatics

created at Oct. 1, 2018, 11:55 a.m.

Julia

9 +0

187 +2

27 +0

GitHub
summit by sustainable-processes

Optimising chemical reactions using machine learning

created at July 31, 2019, 3:13 p.m.

Jupyter Notebook

8 +0

113 +1

23 +0

GitHub
opsin by dan2097

Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion

created at April 5, 2020, 3:41 p.m.

Java

6 +0

132 +0

28 +0

GitHub
3D-e-Chem-VM by 3D-e-Chem

Virtual machine with all software and sample data to run 3D-e-Chem Knime workflows

created at Jan. 11, 2016, 9:10 p.m.

Shell

6 +0

16 +0

3 +0

GitHub
auto-qchem by doyle-lab-ucla

Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.

created at Nov. 12, 2019, 5:03 p.m.

Python

5 +0

77 +0

14 +0

GitHub
olorenchemengine by Oloren-AI

OCE is the first infinitely composable library for reproducibly implementing SOTA molecular property prediction/QSAR techniques.

created at Aug. 24, 2022, 3:52 a.m.

Python

5 +0

94 +0

15 +0

GitHub
razi by rvianello

A cheminformatics extension for the SQLAlchemy database toolkit.

created at May 26, 2011, 7:30 p.m.

Python

4 +0

37 +0

14 +0

GitHub