descriptastorus by bp-kelley

Descriptor computation(chemistry) and (optional) storage for machine learning

created at Dec. 17, 2018, 4:56 p.m.

Python

11 +0

207 +0

59 +0

GitHub
MolecularGraph.jl by mojaie

Graph-based molecule modeling toolkit for cheminformatics

created at Oct. 1, 2018, 11:55 a.m.

Julia

9 +0

184 +1

27 +0

GitHub
ChEMBL_Structure_Pipeline by chembl

ChEMBL database structure pipelines

created at Feb. 6, 2019, 1:43 p.m.

Python

15 +0

176 +0

38 +0

GitHub
awesome-small-molecule-ml by benb111

A curated list of resources for machine learning for small-molecule drug discovery

created at Dec. 22, 2021, 2:33 p.m.

Unknown languages

16 +1

175 +2

27 +0

GitHub
webchem by ropensci

Chemical Information from the Web

created at March 5, 2015, 2:41 p.m.

R

19 +0

156 +0

40 +0

GitHub
chemml by hachmannlab

ChemML is a machine learning and informatics program suite for the chemical and materials sciences.

created at Dec. 7, 2017, 4:48 a.m.

Python

14 +0

151 +0

29 +0

GitHub
MolVS by mcs07

Molecule Validation and Standardization

created at June 30, 2014, 1:37 p.m.

Python

19 +0

146 +0

51 +0

GitHub
rdchiral by connorcoley

Wrapper for RDKit's RunReactants to improve stereochemistry handling

created at June 17, 2017, 1:57 p.m.

Jupyter Notebook

19 +0

144 +0

49 +0

GitHub
dockstring by dockstring

A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.

created at April 22, 2021, 2:09 a.m.

Python

9 +0

134 +3

28 +0

GitHub
opsin by dan2097

Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion

created at April 5, 2020, 3:41 p.m.

Java

6 +0

128 +0

27 +0

GitHub
rd_filters by PatWalters

A script to run structural alerts using the RDKit and ChEMBL

created at Aug. 8, 2018, 1:29 a.m.

Python

15 +0

119 +0

35 +1

GitHub
summit by sustainable-processes

Optimising chemical reactions using machine learning

created at July 31, 2019, 3:13 p.m.

Jupyter Notebook

8 +0

109 +2

21 +0

GitHub
jchempaint by JChemPaint

Chemical 2D structure editor application/applet based on the Chemistry Development Kit

created at May 22, 2012, 3:09 p.m.

Java

18 +0

106 +0

34 +0

GitHub
olorenchemengine by Oloren-AI

OCE is the first infinitely composable library for reproducibly implementing SOTA molecular property prediction/QSAR techniques.

created at Aug. 24, 2022, 3:52 a.m.

Python

5 +0

94 +0

15 +0

GitHub
rdeditor by EBjerrum

Simple RDKit molecule editor GUI using PySide

created at Sept. 13, 2018, 8:57 a.m.

Python

8 +0

85 +2

22 +0

GitHub
awesome-molecular-docking by Thinklab-SJTU

We would like to maintain a list of resources which aim to solve molecular docking and other closely related tasks.

created at Dec. 10, 2022, 1:41 p.m.

Unknown languages

3 +0

85 +1

5 +1

GitHub
auto-qchem by doyle-lab-ucla

Auto-QChem is an automated workflow for the generation and storage of DFT calculations for organic molecules.

created at Nov. 12, 2019, 5:03 p.m.

Python

5 +0

75 +1

14 +0

GitHub
chembl_beaker by chembl

RDKit wrapper

created at Oct. 1, 2013, 5:13 p.m.

Python

23 +0

47 +0

22 +0

GitHub
CGRtools by cimm-kzn

CGRs, molecules and reactions manipulation

created at Dec. 23, 2020, 10:34 a.m.

Python

3 +0

40 +1

16 +0

GitHub
razi by rvianello

A cheminformatics extension for the SQLAlchemy database toolkit.

created at May 26, 2011, 7:30 p.m.

Python

4 +0

37 +0

14 +0

GitHub