SORTED by PTDZ

SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the spirit of Open Science. Additionally, it includes interesting miscellaneous links related to AI, biohacking, and productivity.

created at July 27, 2022, 5:05 p.m.

Unknown languages

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GitHub
nat by natverse

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

created at Jan. 2, 2014, 7:54 a.m.

R

17 +0

64 +0

29 +0

GitHub
expyriment by expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

created at Aug. 6, 2013, 12:38 p.m.

Python

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115 +1

40 +0

GitHub
brainGraph by cwatson

Graph theory analysis of brain MRI data

created at Jan. 22, 2015, 9:46 p.m.

R

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178 +1

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GitHub
neuroSummerSchools by PhABC

List of summer schools in neuroscience and related fields

created at Jan. 21, 2017, 5:19 p.m.

Python

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216 +1

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GitHub
nitime by nipy

Timeseries analysis for neuroscience data

created at Sept. 2, 2009, 12:29 a.m.

Python

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GitHub
Brayns by BlueBrain

Visualizer for large-scale and interactive ray-tracing of neurons

created at June 17, 2016, 9:49 a.m.

C++

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GitHub
brainbrowser by aces

Web-based visualization tools for neurological data.

created at March 12, 2014, 4:10 p.m.

JavaScript

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GitHub
spikeinterface by SpikeInterface

A Python-based module for creating flexible and robust spike sorting pipelines.

created at July 12, 2019, 1:07 p.m.

Python

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527 +3

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GitHub
nibabel by nipy

Python package to access a cacophony of neuro-imaging file formats

created at July 22, 2010, 4:28 p.m.

Python

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258 +0

GitHub
dipy by dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

created at Feb. 6, 2010, 11:43 a.m.

Python

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GitHub
nengo by nengo

A Python library for creating and simulating large-scale brain models

created at April 20, 2013, 6:46 p.m.

Python

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830 +6

180 +1

GitHub
fieldtrip by fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

created at Jan. 23, 2013, 10:10 p.m.

MATLAB

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850 +3

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GitHub
brian2 by brian-team

Brian is a free, open source simulator for spiking neural networks.

created at Nov. 27, 2012, 1:46 p.m.

Python

47 +0

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GitHub
nilearn by nilearn

Machine learning for NeuroImaging in Python

created at Jan. 9, 2011, 7:02 p.m.

Python

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GitHub
bindsnet by BindsNET

Simulation of spiking neural networks (SNNs) using PyTorch.

created at Feb. 9, 2018, 7:42 p.m.

Python

43 +0

1,507 +1

331 +0

GitHub
psychopy by psychopy

For running psychology and neuroscience experiments

created at Sept. 1, 2010, 5 p.m.

Python

66 +0

1,693 +4

912 +2

GitHub
course-content by NeuromatchAcademy

NMA Computational Neuroscience course

created at May 10, 2020, 7:09 p.m.

Jupyter Notebook

97 +0

2,674 +4

994 +1

GitHub
mne-python by mne-tools

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

created at Jan. 28, 2011, 3:31 a.m.

Python

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GitHub
nupic-legacy by numenta

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.

created at April 5, 2013, 11:14 p.m.

Python

627 +0

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GitHub