nat by natverse

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

updated at Oct. 15, 2024, 10:08 a.m.

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Brayns by BlueBrain

Visualizer for large-scale and interactive ray-tracing of neurons

updated at Oct. 30, 2024, 6:01 p.m.

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nitime by nipy

Timeseries analysis for neuroscience data

updated at Nov. 6, 2024, 5:39 p.m.

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brainbrowser by aces

Web-based visualization tools for neurological data.

updated at Nov. 6, 2024, 10:12 p.m.

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nibabel by nipy

Python package to access a cacophony of neuro-imaging file formats

updated at Nov. 8, 2024, 1:39 a.m.

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brainGraph by cwatson

Graph theory analysis of brain MRI data

updated at Nov. 13, 2024, 10:09 a.m.

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dipy by dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

updated at Nov. 14, 2024, 12:06 a.m.

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nupic-legacy by numenta

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.

updated at Nov. 14, 2024, 5:25 a.m.

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bindsnet by BindsNET

Simulation of spiking neural networks (SNNs) using PyTorch.

updated at Nov. 14, 2024, 11:22 a.m.

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brian2 by brian-team

Brian is a free, open source simulator for spiking neural networks.

updated at Nov. 15, 2024, 11:58 a.m.

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nengo by nengo

A Python library for creating and simulating large-scale brain models

updated at Nov. 15, 2024, 8:30 p.m.

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expyriment by expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

updated at Nov. 15, 2024, 8:50 p.m.

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spikeinterface by SpikeInterface

A Python-based module for creating flexible and robust spike sorting pipelines.

updated at Nov. 15, 2024, 10:02 p.m.

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neuroSummerSchools by PhABC

List of summer schools in neuroscience and related fields

updated at Nov. 15, 2024, 10:56 p.m.

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nilearn by nilearn

Machine learning for NeuroImaging in Python

updated at Nov. 16, 2024, 8:16 a.m.

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SORTED by PTDZ

SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the spirit of Open Science. Additionally, it includes interesting miscellaneous links related to AI, biohacking, and productivity.

updated at Nov. 16, 2024, 9:58 a.m.

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psychopy by psychopy

For running psychology and neuroscience experiments

updated at Nov. 16, 2024, 10:27 p.m.

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mne-python by mne-tools

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

updated at Nov. 16, 2024, 10:33 p.m.

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fieldtrip by fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

updated at Nov. 17, 2024, 12:19 p.m.

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course-content by NeuromatchAcademy

NMA Computational Neuroscience course

updated at Nov. 17, 2024, 2:54 p.m.

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