SORTED by PTDZ

SORTED: a curated list of interesting science ideas and links (cognitive/neuro & data science)

updated at Feb. 23, 2024, 9:59 a.m.

2 +0

11 +0

0 +0

neuroSummerSchools by PhABC

List of summer schools in neuroscience and related fields

updated at March 31, 2024, 6:58 p.m.

48 +0

213 +0

37 +0

brainGraph by cwatson

Graph theory analysis of brain MRI data

updated at April 14, 2024, 5:31 p.m.

17 +0

163 +0

47 +0

nat by natverse

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

updated at April 22, 2024, 5:16 p.m.

17 +0

60 +0

25 +1

nibabel by nipy

Python package to access a cacophony of neuro-imaging file formats

updated at April 29, 2024, 1:27 p.m.

37 +0

625 +0

258 +0

dipy by dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

updated at April 29, 2024, 4:06 p.m.

50 +0

669 +0

428 +0

nengo by nengo

A Python library for creating and simulating large-scale brain models

updated at April 30, 2024, 6:22 a.m.

75 +0

801 +2

174 +0

nilearn by nilearn

Machine learning for NeuroImaging in Python

updated at April 30, 2024, 11:12 a.m.

68 +0

1,108 +1

572 +2

Brayns by BlueBrain

Visualizer for large-scale and interactive ray-tracing of neurons

updated at April 30, 2024, 12:56 p.m.

22 +0

286 +0

46 +0

brainbrowser by aces

Web-based visualization tools for neurological data.

updated at May 1, 2024, 2:42 p.m.

32 +0

346 +1

121 +1

nitime by nipy

Timeseries analysis for neuroscience data

updated at May 2, 2024, 12:49 a.m.

31 +0

234 +1

83 +0

brian2 by brian-team

Brian is a free, open source simulator for spiking neural networks.

updated at May 2, 2024, 7:58 p.m.

47 +0

883 +2

215 +1

expyriment by expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

updated at May 3, 2024, 10:45 a.m.

14 +0

113 +0

40 -1

spikeinterface by SpikeInterface

A Python-based module for creating flexible and robust spike sorting pipelines.

updated at May 3, 2024, 2:01 p.m.

25 +0

413 +5

153 +0

course-content by NeuromatchAcademy

NMA Computational Neuroscience course

updated at May 4, 2024, 6:58 a.m.

95 +0

2,592 +2

967 +1

fieldtrip by fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

updated at May 4, 2024, 7:40 a.m.

49 +0

806 +1

710 +2

bindsnet by BindsNET

Simulation of spiking neural networks (SNNs) using PyTorch.

updated at May 4, 2024, 8:11 a.m.

43 +0

1,431 +3

332 -1

nupic-legacy by numenta

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.

updated at May 4, 2024, 3:57 p.m.

625 +0

6,330 -1

1,562 -1

mne-python by mne-tools

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

updated at May 5, 2024, 3:31 a.m.

83 +0

2,560 +7

1,285 +1

psychopy by psychopy

For running psychology and neuroscience experiments

updated at May 5, 2024, 3:55 p.m.

66 +0

1,611 +4

878 +1