mosdepth in danielecook/Awesome-Bioinformatics

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

updated at May 3, 2024, 12:24 p.m.

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somalier in danielecook/Awesome-Bioinformatics

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

updated at May 2, 2024, 2:45 p.m.

11 +0

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smoove in danielecook/Awesome-Bioinformatics

structural variant calling and genotyping with existing tools, but, smoothly.

updated at May 1, 2024, 8:01 a.m.

10 +0

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cruzdb in danielecook/Awesome-Bioinformatics

python access to UCSC genomes database

updated at April 23, 2024, 8:01 p.m.

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vcfanno in danielecook/Awesome-Bioinformatics

annotate a VCF with other VCFs/BEDs/tabixed files

updated at April 22, 2024, 5:21 p.m.

26 +0

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cyvcf2 in danielecook/Awesome-Bioinformatics

cython + htslib == fast VCF and BCF processing

updated at April 10, 2024, 2:11 p.m.

7 +0

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gsort in danielecook/Awesome-Bioinformatics

sort genomic data

updated at June 16, 2023, 4:13 p.m.

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