BioGPT by Microsoft

None

created at Aug. 15, 2022, 5:55 a.m.

70 +2

4,234 +4

433 +5

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

created at March 15, 2009, 9:09 p.m.

170 -1

4,160 +12

1,711 +2

mimic-code by MIT-LCP

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

created at Sept. 1, 2015, 11:03 p.m.

134 +0

2,311 +10

1,476 +0

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 24, 2019, 6:27 p.m.

62 +1

1,834 +4

438 +0

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

created at Jan. 28, 2011, 5:37 a.m.

80 +0

1,775 +2

510 +0

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

created at Sept. 24, 2018, 9:45 p.m.

53 +0

1,609 +8

220 +0

scibert by allenai

A BERT model for scientific text.

created at Jan. 30, 2019, 7 p.m.

50 +0

1,429 +5

211 +0

CommonDataModel by OHDSI

Definition and DDLs for the OMOP Common Data Model (CDM)

created at Oct. 14, 2014, 8:20 p.m.

124 +0

829 +4

437 +1

biobert-pretrained by naver

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 28, 2019, 2:05 a.m.

26 +0

630 +0

85 +0

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

created at April 5, 2019, 8:50 p.m.

25 +0

624 +1

126 +1

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

created at June 6, 2019, 2:02 p.m.

23 +0

537 +0

76 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

created at Sept. 28, 2018, 2:48 p.m.

26 +0

419 +1

92 +0

clinicalBERT by kexinhuang12345

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

created at March 30, 2019, 8:06 a.m.

15 +0

348 +1

91 +0

HumanDiseaseOntology by DiseaseOntology

Repository for the Human Disease Ontology.

created at Sept. 23, 2015, 2:48 p.m.

20 +0

322 +0

107 +0

anafora by weitechen

Anafora is a web-based raw text annotation tool

created at April 8, 2013, 4:44 p.m.

22 +0

238 +0

55 +0

med7 by kormilitzin

None

created at Feb. 26, 2020, 11:03 p.m.

14 +0

198 +1

25 +0

rentrez by ropensci

talk with NCBI entrez using R

created at Feb. 11, 2012, 11:44 p.m.

14 +0

191 +1

40 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

created at Dec. 4, 2017, 4:45 a.m.

23 +0

163 +1

71 +0

cord19 by allenai

Get started with CORD-19

created at April 27, 2020, 1:48 a.m.

13 +0

147 +0

21 +0

BioWordVec by ncbi-nlp

None

created at Feb. 22, 2019, 4:32 p.m.

11 +0

138 +1

29 +0