BioGPT by Microsoft

None

created at Aug. 15, 2022, 5:55 a.m.

70 +0

4,233 +0

435 +0

biopython by biopython

Official git repository for Biopython (originally converted from CVS)

created at March 15, 2009, 9:09 p.m.

168 +0

4,181 +6

1,717 +3

biobert by dmis-lab

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

created at Jan. 24, 2019, 6:27 p.m.

61 -1

1,847 +2

441 +2

brat by nlplab

brat rapid annotation tool (brat) - for all your textual annotation needs

created at Jan. 28, 2011, 5:37 a.m.

80 +0

1,779 +3

510 +0

scispacy by allenai

A full spaCy pipeline and models for scientific/biomedical documents.

created at Sept. 24, 2018, 9:45 p.m.

52 +0

1,617 +0

220 -1

scibert by allenai

A BERT model for scientific text.

created at Jan. 30, 2019, 7 p.m.

49 -1

1,440 +2

212 +1

clinicalBERT by EmilyAlsentzer

repository for Publicly Available Clinical BERT Embeddings

created at April 5, 2019, 8:50 p.m.

25 +0

631 +1

126 +0

bluebert by ncbi-nlp

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

created at June 6, 2019, 2:02 p.m.

23 +0

538 +1

76 +0

medaCy by NLPatVCU

Medical Text Mining and Information Extraction with spaCy

created at Sept. 28, 2018, 2:48 p.m.

26 +0

423 +0

91 +0

biolink-model by biolink

Schema and generated objects for biolink data model and upper ontology

created at Dec. 4, 2017, 4:45 a.m.

23 +0

167 +0

71 +0

BioWordVec by ncbi-nlp

None

created at Feb. 22, 2019, 4:32 p.m.

11 +0

138 -1

29 +0

TabInOut by nikolamilosevic86

Framework for information extraction from tables

created at April 7, 2016, 3:41 p.m.

5 +0

41 +0

10 +0

pubrunner by jakelever

A framework for keeping biomedical text mining result up-to-date

created at Aug. 30, 2017, 9:30 p.m.

7 +0

41 +0

6 +0