circos by vigsterkr

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

created at Oct. 13, 2010, 9:28 p.m.

9 +0

74 +0

32 +0

poapy by ljdursi

A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes

created at April 28, 2015, 9:38 p.m.

8 +0

71 +0

12 +0

telseq by zd1

A software for calculating telomere length

created at May 27, 2013, 3:58 p.m.

9 +0

67 +0

26 +0

dnaism by drio

Horizon chart js library for DNA data.

created at Jan. 6, 2014, 4:33 p.m.

8 +0

61 +0

6 +0

cyvcf by arq5x

A fast Python library for VCF files leveraging Cython for speed.

created at April 12, 2012, 6:51 p.m.

6 +0

52 +0

13 +0

awesome-alternative-splicing by HussainAther

Alternative splicing resource

created at March 31, 2018, 1:16 a.m.

4 +0

51 +0

9 +0

Circleator by jonathancrabtree

Flexible circular visualization of genome-associated data with BioPerl and SVG.

created at Sept. 13, 2013, 8:19 p.m.

5 +0

47 +0

8 +0

ggd-cli by gogetdata

The command-line interface to GGD

created at April 22, 2016, 3:36 p.m.

5 +0

42 +0

3 +0

squiggle by IQTLabs

📈 DNA Sequence Visualization for Humans

created at July 4, 2018, 3:47 a.m.

6 +0

40 +0

9 +0

gsort by brentp

sort genomic data

created at April 15, 2016, 6:41 p.m.

5 +0

35 +0

1 +0

islandplot by lairdm

SVG based genome viewer written in javascript using D3

created at Nov. 6, 2013, 10:22 p.m.

5 +0

33 +0

27 +0

ngs-preprocess by fmalmeida

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

created at Sept. 19, 2019, 7:01 p.m.

4 +0

31 +0

5 +0

seqware by SeqWare

This is the SeqWare Project's main repo.

created at May 11, 2012, 3:51 p.m.

26 +0

28 +0

17 +0

easy_qsub by shenwei356

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.

created at March 9, 2015, 9:40 a.m.

3 +0

28 +0

8 +0

wormtable by wormtable

Write-once-read-many table for large datasets.

created at Oct. 27, 2012, 5:01 p.m.

6 +0

28 +0

5 +0

wdl by broadinstitute

Workflow Description Language - Specification and Implementations

created at Jan. 12, 2018, 6:20 p.m.

11 +0

26 +0

6 +0

samstat by TimoLassmann

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

created at Dec. 11, 2017, 7:07 a.m.

3 +0

24 +0

6 +0

PHAT by chgibb

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

created at Oct. 11, 2016, 3:04 p.m.

4 +0

17 +0

2 +0

smof by incertae-sedis

Explore and analyze biological sequence data

created at April 27, 2014, 12:34 p.m.

3 +0

16 +0

3 +0

mergesam by DarwinAwardWinner

Automate common sam & bam conversions

created at Aug. 26, 2011, 2:19 p.m.

3 +0

7 +0

1 +0