igv by igvteam

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

created at Feb. 11, 2012, 5:30 p.m.

Java

48 +0

647 +0

386 +0

GitHub
FastQC by s-andrews

A quality control analysis tool for high throughput sequencing data

created at Dec. 21, 2017, 11:48 a.m.

Java

13 +0

459 +2

86 +0

GitHub
gatk by broadgsa

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

created at June 28, 2011, 1:08 p.m.

Java

68 +0

295 +0

223 +0

GitHub
gridss by PapenfussLab

GRIDSS: the Genomic Rearrangement IDentification Software Suite

created at June 11, 2015, 11 a.m.

Java

23 +0

259 +0

71 +0

GitHub
SnpEff by pcingola

None

created at Jan. 31, 2014, 10:22 p.m.

Java

26 +0

258 +0

81 +0

GitHub
seqware by SeqWare

This is the SeqWare Project's main repo.

created at May 11, 2012, 3:51 p.m.

Java

26 +0

28 +0

17 +0

GitHub
wdl by broadinstitute

Workflow Description Language - Specification and Implementations

created at Jan. 12, 2018, 6:20 p.m.

Java

11 +0

26 +0

6 +0

GitHub
r-peridot by pentalpha

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

created at April 27, 2017, 5:47 p.m.

Java

2 +0

4 +0

0 +0

GitHub